PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016108.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 149aa    MW: 16932.9 Da    PI: 5.0782
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016108.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB164.11.8e-51398297
        NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                 +eqd++lPianv+rimk++lP  akisk+ak+t+qec++efisfvt+easdkc++e+rkt+ngdd++wal++lGf+dy+e++  yl++yre+e+e+
  CCG016108.1  3 EEQDKLLPIANVGRIMKQILPPTAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDDYAEAIVRYLHRYREVERER 98
                 69*******************************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-502125IPR009072Histone-fold
SuperFamilySSF471132.58E-395127IPR009072Histone-fold
PfamPF008081.1E-26972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-173654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.5E-175573No hitNo description
PRINTSPR006152.5E-177492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEEEQDKLLP IANVGRIMKQ ILPPTAKISK EAKQTMQECA TEFISFVTGE ASDKCHKENR  60
KTVNGDDICW ALSSLGFDDY AEAIVRYLHR YREVERERSA NQHKASGTEQ DIEESNHISF  120
QPQQQIEAPK GIEFRILDKG NSSSFTNPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-40493392Transcription factor HapC (Eurofung)
4g92_B2e-40493392Transcription factor HapC (Eurofung)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023651.11e-109PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO040272e-57NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLB9I7Q31e-107B9I7Q3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s02030.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.11e-58nuclear factor Y, subunit B4